There are lots and I'm too lazy to write them down lol but the most recent was Mario + Rabbids: Kingdom Battle. I'm replaying it again (in anticipation for the Donkey Kong DLC) and hopefully I could finish it 100% again.
Ocarina of Time (both the regular game and Master Mode)
Majora's Mask (3 times)
Twilight Princess (twice)
A Link Between Worlds
Pokemon Alpha Sapphire (beat the game + completed the National Pokedex)
Pokemon Sun (beat the game + completed the Alola Pokedex)
Spyro: Ripto's Rage
Spyro: Year of the Dragon
This list would be longer if I included PS1/2, Nintendo titles, and handheld games. Buuuut that would be messy and I'd no doubt forget a ton so I just looked at my PSN Profile.
GTA III-V, Vice City, San Andreas
120 stars in Super Mario 64
All of the games featured on Super Mario All-Stars (SMB1, SMB Lost Levels, SMB2, SMB3)
All exits of Super Mario World
Other games that I can't think of off the top of my head.
I want to one day 100% all of the Animal Crossings, despite of the enormous amount of stuff to do in-game. The Paper Mario series would also be really fun to 100%!