I'll only post my Wii U/3DS physical games (not anything downloaded from the eShop, though I do have plenty of games I downloaded from the eShop) since i'll have a LOT of games to post if I post all of my games. They'll also be in the order in which I got them.
Wii U Games:
Game & Wario
Monster Hunter 3 Ultimate
Nintendo Land (came bundled with my Wii U but I did buy Game & Wario and MH3U a few days before I got my Wii U in the mail)
New Super Mario Bros. U
Need for Speed Most Wanted U
LEGO City Undercover
Pikmin 3
Sonic & All-Stars Racing Transformed
New Super Luigi U
The Wonderful 101
The Legend of Zelda: Wind Waker HD
Rayman Legends
Super Mario 3D World
Donkey Kong Country: Tropical Freeze
Sonic Lost World
Mario Kart 8
Scribblenauts Unlimited
Wii Fit U
The Amazing Spider-Man 2
Pac-Man and the Ghostly Adventures [1] (I hate this game so much. I seriously regret spending $20 on it.)
Ducktales Remastered
Hyrule Warriors
Super Smash Bros. Wii U
Captain Toad: Treasure Tracker
I'm also going to be getting the Mario Party 10 amiibo bundle very soon (maybe tomorrow or later this week). I'll be picking up games like Kirby and the Rainbow Curse in the future.
3DS Games:
Super Monkey Ball 3D
Nintendogs + Cats: Toy Poodle Version
The Legend of Zelda: Ocarina of Time 3D
Pac-Man and Galaga Dimensions
Star Fox 64 3D
Pokemon Rumble Blast
Super Mario 3D World
Mario Kart 7
Kid Icarus: Uprising
Mario Tennis Open
LEGO Batman 2
The Amazing Spider-Man [1]
Pilotwings Resort
Kingdom Hearts 3D: Dream Drop Distance
New Super Mario Bros. 2
Paper Mario: Sticker Star
FIFA 13 (No, i'm not like those people who go crazy for FIFA. I like the games (not love), and i'll buy a new one every couple of years since it's fun.)
Theatrhythm Final Fantasy
Luigi's Mansion Dark Moon
Animal Crossing: New Leaf
Fire Emblem: Awakening
Project X Zone
Steel Diver
Pokemon Mystery Dungeon: Gates to Infinity
Mario & Luigi: Dream Team
Professor Layton and the Miracle Mask
Adventure Time: Hey Ice King! Why'd You Steal Our Garbage!?
Pokemon X
The Legend of Zelda: A Link Between Worlds
Mario Party Island Tour
Yoshi's New Island
Tomodachi Life
Rayman 3D
Kirby Triple Deluxe
Pokemon Y
Mario Golf: World Tour
Professor Layton and the Azran Legacy
Bravely Default
Super Smash Bros. 3D
Pokemon Alpha Sapphire
Theatrhythm Final Fantasy: Curtain Call (I have the limited edition version of this game, but I pre-ordered it from Amazon in the US back before it released. Right now, i'm not in the US, but the game is waiting for me in my house in the US for when I go back this summer.)
I'll also be picking up games like The Legend of Zelda: Majora's Mask 3D, Codename S.T.E.A.M, and Monster Hunter 4 Ultimate in the future. Another physical game that I have is Bit Trip Saga; however, I downloaded it digitally because it was on sale and the Bit Trip games originated digitally.
This is just a little extra, but here are all of the amiibos I have!
Amiibos:
Yoshi
Samus
Little Mac
Captain Falcon
Pit
Diddy Kong
Fox
Bowser
Ike
Lucario
Rosalina & Luma
Sheik
I also might be getting the Mario amiibo from the Mario Party 10 amiibo bundle soon.